Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics | Journal of Proteome Research
Efficient and robust proteome-wide approaches for cross-linking mass spectrometry | Nature Protocols
The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data | bioRxiv
A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS - ScienceDirect
Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry: Trends in Biochemical Sciences
Determining Alternative Protein Isoform Expression Using RNA Sequencing and Mass Spectrometry - ScienceDirect
SPECTRUM – A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data | Scientific Reports
IJMS | Free Full-Text | Mass-Spectrometry-Based Functional Proteomic and Phosphoproteomic Technologies and Their Application for Analyzing Ex Vivo and In Vitro Models of Hypertrophic Cardiomyopathy
A cross-platform toolkit for mass spectrometry and proteomics - Document - Gale Academic OneFile
OpenMS: a flexible open-source software platform for mass spectrometry data analysis | Nature Methods
Methods to capture proteomic and metabolomic signatures from cerebrospinal fluid and serum of healthy individuals | Scientific Reports
Single-platform 'multi-omic' profiling: unified mass spectrometry and computational workflows for integrative proteomics–metabolomics analysis - Molecular Omics (RSC Publishing)
Biomedicines | Free Full-Text | Study on Tissue Homogenization Buffer Composition for Brain Mass Spectrometry-Based Proteomics
Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes - ScienceDirect
Crux: Rapid Open Source Protein Tandem Mass Spectrometry Analysis
Viruses | Free Full-Text | Top-Down and Bottom-Up Proteomics Methods to Study RNA Virus Biology
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery | Nature Communications
Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows - Verheggen - 2020 - Mass Spectrometry Reviews - Wiley Online Library
Cleavable Cross-Linkers and Mass Spectrometry for the Ultimate Task of Profiling Protein–Protein Interaction Networks in Vivo | Journal of Proteome Research
Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows - Verheggen - 2020 - Mass Spectrometry Reviews - Wiley Online Library
MSpectraAI: a powerful platform for deciphering proteome profiling of multi-tumor mass spectrometry data by using deep neural networks | BMC Bioinformatics | Full Text
MASH Explorer
A cross-platform toolkit for mass spectrometry and proteomics | Nature Biotechnology
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis | PLOS Computational Biology
